miRBase entry: ggo-mir-496

Stem-loop ggo-mir-496


Accession
MI0020770
Description
Gorilla gorilla ggo-mir-496 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

cgcuggaagcgagcacccaagucagguacucgaauggagguuguccaugguguguucauuuuauuuaugaUGAGUAUUACAUGGCCAAUCuccuuucgguacucaguucu
((((...)))).............(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).))))))))).......

Structure
cgcuggaagcgagcacccaaguca     u    u        u     gu         uua 
                        gguac cgaa ggagguug ccaug  guguucauu   u
                        ||||| |||| |||||||| |||||  |||||||||    
                        ucaug gcuu ccuCUAAC GGUAC  UAUGAGUag   u
-----------------ucuugac     -    u        C     AU         uau 


Annotation confidence Not enough data
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Genome context
chr14: 85083613-85083722 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from ggo-mir-496
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-496

Accession MIMAT0024223
Description Gorilla gorilla ggo-miR-496 mature miRNA
Sequence 71 - UGAGUAUUACAUGGCCAAUC - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116