miRBase entry: ggo-mir-380

Stem-loop ggo-mir-380


Accession
MI0020742
Description
Gorilla gorilla ggo-mir-380 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

ucuccaagguaccugaaaagaugguugaccauagaacaugcgcuaucucugugucgUAUGUAAUAUGGUCCACAUCuucucaauaucaaauucagucauagagggcuuccc
.......((((..(((.((((((...(((((((..(((((((.(((....))).)))))))..)))))))..)))))).))).))))......((((......))))....

Structure
-----------------ucuccaa    cc   a      guu       ga       c   c 
                        ggua  uga aagaug   gaccaua  acaugcg uau u
                        ||||  ||| ||||||   |||||||  ||||||| |||  
                        cuau  acu uuCUAC   CUGGUAU  UGUAUgc gug c
cccuucgggagauacugacuuaaa    -a   c      -AC       AA       u   u 


Annotation confidence Not enough data
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Genome context
chr14: 85048332-85048442 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from ggo-mir-380
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-380

Accession MIMAT0024195
Description Gorilla gorilla ggo-miR-380 mature miRNA
Sequence 57 - UAUGUAAUAUGGUCCACAUC - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116