miRBase entry: ggo-mir-125a

Stem-loop ggo-mir-125a


Accession
MI0020680
Description
Gorilla gorilla ggo-mir-125a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
1 open access papers mention ggo-mir-125a
(1 sentences)

Sequence

ccauguugccagucucuaggUCCCUGAGACCCUUUAACCUGugaggacauccagggucacaggugagguucuugggagccuggugucuggcccaaccacacaccuggg
.......(((((.(.((((((.(((((((.((((..((((((((((....))....)))))))))))).))))))).)))))).).)))))....(((......))).

Structure
----------ccauguu     u u      C       C    UA        ----  a 
                 gccag c cuaggU CCUGAGA CCUU  ACCUGuga    gg c
                 ||||| | |||||| ||||||| ||||  ||||||||    ||  
                 cgguc g gguccg ggguucu ggag  uggacacu    cc a
ggguccacacaccaacc     u u      a       u    --        ggga  u 


Annotation confidence Not enough data
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Genome context
chr19: 51004406-51004513 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ggo-mir-125a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-125a

Accession MIMAT0024133
Description Gorilla gorilla ggo-miR-125a mature miRNA
Sequence 21 - UCCCUGAGACCCUUUAACCUG - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116