Stem-loop ptr-mir-4654

Accession

MI0020600

Description

Pan troglodytes ptr-mir-4654 precursor miRNA

Gene family

MIPF0001507; mir-4654

Sequence

augguauggggcuggcugguUGUGGGAUCUGGAGGCAUCUGGGguuggaaugugaccccagucuccuuuucccucaucaucugccagcccuuauggcacaugugccucuuccu
.......(((((((((.(((((.((((...((((((...((((((((.....))))))))))))))...)))).))..))).)))))))))...((((....)))).......

Structure

---------------augguau         u   --  U    UCU      AUC        g 
                      ggggcuggc ggu  UG GGGA   GGAGGC   UGGGguug a
                      ||||||||| |||  || ||||   ||||||   |||||||| a
                      ucccgaccg cua  ac cccu   ccucug   accccagu u
uccuucuccguguacacgguau         u   cu  u    uuu      ---        g 

Annotation confidence Not enough data

Genome context

chr1: 140244900-140245012 [+]

Mature ptr-miR-4654

• Accession: MIMAT0024053
• Description: Pan troglodytes ptr-miR-4654 mature miRNA
• Sequence: 21 - UGUGGGAUCUGGAGGCAUCUGGG - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116