Stem-loop ptr-mir-4660

Accession

MI0020582

Description

Pan troglodytes ptr-mir-4660 precursor miRNA

Gene family

MIPF0001460; mir-4660

Sequence

aaagacagccaaacuccuccUGCAGCUCUGGUGGAAAAUGGAgaagacuuuuccuuuccuccaucucccccagggccugguggaguaaggcguugcccagcuauaaacugu
...(((.(((..(((((.((....(((((((.(((..(((((((((.......)))..)))))).))).)))))))..)).)))))..))))))...(((.......))).

Structure

--------------aaa   a   aa     u  UGCA       U   AA      --   ac 
                 gac gcc  acucc cc    GCUCUGG GGA  AUGGAg  aag  u
                 ||| |||  ||||| ||    ||||||| |||  ||||||  |||  u
                 uug cgg  ugagg gg    cgggacc ccu  uaccuc  uuc  u
ugucaaauaucgacccg   -   aa     u  --uc       c   -c      cu   cu 

Annotation confidence Not enough data

Genome context

chr8: 8383344-8383454 [+]

Mature ptr-miR-4660

• Accession: MIMAT0024035
• Description: Pan troglodytes ptr-miR-4660 mature miRNA
• Sequence: 21 - UGCAGCUCUGGUGGAAAAUGGA - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116