miRBase entry: cgr-mir-98

Stem-loop cgr-mir-98


Accession
MI0020563
Description
Cricetulus griseus cgr-mir-98 precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

18034 reads, 221 reads per million, 6 experiments
augcuggggUGAGGUAGUAAGUUGUAUUGUUgugggguagggauuuugggccccaauaagaagauaacuauacaacuuac
................(((((((((((.((((((((((...........)))))).........)))).)))))))))))

Structure
augcuggggUGAGGUA           U    ---------      aggg 
                GUAAGUUGUAU GUUg         uggggu    a
                ||||||||||| ||||         ||||||    u
                cauucaacaua caau         accccg    u
----------------           u    agaagaaua      gguu 


Annotation confidence Not enough data
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Genome context
JH000201.1: 1737577-1737656 [+]

Database links

Mature cgr-miR-98

Accession MIMAT0024015
Description Cricetulus griseus cgr-miR-98 mature miRNA
Sequence 10 - UGAGGUAGUAAGUUGUAUUGUU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75