Stem-loop cgr-mir-34b

Accession

MI0020506

Description

Cricetulus griseus cgr-mir-34b precursor miRNA

Gene family

MIPF0000039; mir-34

Literature search

2 open access papers mention cgr-mir-34b
(4 sentences)

Sequence

26203 reads, 306 reads per million, 6 experiments

ucgguuuguAGGCAGUGUAAUUAGCUGAUUGUaccgcggugcugacAAUCACUAACUCCACUGCCAUCaaaacaaggc
...((((...(((((((...((((.(((((((.(.((...)).))))))))))))...)))))))....)))).....

Structure

--ucg    -guA       UAA    C       a c  g 
     guuu    GGCAGUG   UUAG UGAUUGU c gc  
     ||||    |||||||   |||| ||||||| | || g
     caaa    CCGUCAC   AAUC ACUAAca g cg  
cggaa    aCUA       CUC    -       - u  u 

Annotation confidence High

Genome context

JH000115.1: 808303-808380 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-34b

Mature cgr-miR-34b-5p

• Accession: MIMAT0023927
• Description: Cricetulus griseus cgr-miR-34b-5p mature miRNA
• Sequence: 10 - AGGCAGUGUAAUUAGCUGAUUGU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-34b-3p

• Accession: MIMAT0023928
• Description: Cricetulus griseus cgr-miR-34b-3p mature miRNA
• Sequence: 47 - AAUCACUAACUCCACUGCCAUC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75