miRBase entry: cgr-mir-340

Stem-loop cgr-mir-340


Accession
MI0020501
Description
Cricetulus griseus cgr-mir-340 precursor miRNA
Gene family
MIPF0000191; mir-340


Sequence

8646 reads, 125 reads per million, 6 experiments
uuggugugaUUAUAAAGCAAUGAGACUGAUUgucauaugucguuugugggaUCCGUCUCAGUUACUUUAUAGCCauaccuggua
..((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).....

Structure
---uu      a        -CAA      U    g     ug 
     ggugug UUAUAAAG    UGAGAC GAUU ucaua  u
     |||||| ||||||||    |||||| |||| |||||  c
     ccauaC GAUAUUUC    ACUCUG CUag ggugu  g
auggu      C        AUUG      C    -     uu 


Annotation confidence Not enough data
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Genome context
JH000566.1: 523039-523122 [+]

Database links

Mature cgr-miR-340-5p

Accession MIMAT0023920
Description Cricetulus griseus cgr-miR-340-5p mature miRNA
Sequence 10 - UUAUAAAGCAAUGAGACUGAUU - 31
Evidence experimental
Illumina [1]

Mature cgr-miR-340-3p

Accession MIMAT0023921
Description Cricetulus griseus cgr-miR-340-3p mature miRNA
Sequence 52 - UCCGUCUCAGUUACUUUAUAGCC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75