Stem-loop cgr-mir-24

Accession

MI0020468

Description

Cricetulus griseus cgr-mir-24 precursor miRNA

Gene family

MIPF0000041; mir-24

Literature search

2 open access papers mention cgr-mir-24
(2 sentences)

Sequence

467117 reads, 6630 reads per million, 6 experiments

uccgccuccuGUGCCUACUGAGCUGAAACAGuugauuccagugcacUGGCUCAGUUCAGCAGGAACAGGaguccagcc
.....(((((((.(((.(((((((((..((((..((....))..))))..))))))))).))).))))))).......

Structure

--uccgc       G   A         AA    ug  u 
       cuccuGU CCU CUGAGCUGA  CAGu  au c
       ||||||| ||| |||||||||  ||||  ||  
       gaGGACA GGA GACUUGACU  GUca  ug c
ccgaccu       A   C         CG    cg  a 

Annotation confidence High

Genome context

JH000286.1: 1078704-1078781 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cgr-mir-24

Mature cgr-miR-24-5p

• Accession: MIMAT0023866
• Description: Cricetulus griseus cgr-miR-24-5p mature miRNA
• Sequence: 11 - GUGCCUACUGAGCUGAAACAG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-24-3p

• Accession: MIMAT0023867
• Description: Cricetulus griseus cgr-miR-24-3p mature miRNA
• Sequence: 47 - UGGCUCAGUUCAGCAGGAACAGG - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75