miRBase entry: cgr-mir-185

Stem-loop cgr-mir-185


Accession
MI0020429
Description
Cricetulus griseus cgr-mir-185 precursor miRNA
Gene family
MIPF0000202; mir-185

Literature search
3 open access papers mention cgr-mir-185
(7 sentences)

Sequence

42330 reads, 554 reads per million, 6 experiments
gugagggauUGGAGAGAAAGGCAGUUCCUGAugguccccucccAGGGGCUGGCUUUCCUCUGGUccuucucucc
(.((((((((((((.(((((.(((((((((..((......))))))))))).))))))))))))))))).)...

Structure
--- u            A     G         Au  uc 
   g gagggauUGGAG GAAAG CAGUUCCUG  gg  c
   | |||||||||||| ||||| |||||||||  ||   
   c cuuccUGGUCUC CUUUC GUCGGGGAc  cc  c
ccu u            -     G         --  uc 


Annotation confidence Not enough data
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Genome context
JH000319.1: 980130-980203 [+]

Database links

Mature cgr-miR-185-5p

Accession MIMAT0023811
Description Cricetulus griseus cgr-miR-185-5p mature miRNA
Sequence 10 - UGGAGAGAAAGGCAGUUCCUGA - 31
Evidence experimental
Illumina [1]

Mature cgr-miR-185-3p

Accession MIMAT0023812
Description Cricetulus griseus cgr-miR-185-3p mature miRNA
Sequence 44 - AGGGGCUGGCUUUCCUCUGGU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75