miRBase entry: cgr-mir-15b

Stem-loop cgr-mir-15b


Accession
MI0020417
Description
Cricetulus griseus cgr-mir-15b precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
1 open access papers mention cgr-mir-15b
(4 sentences)

Sequence

41615 reads, 583 reads per million, 6 experiments
aaaguacuaUAGCAGCACAUCAUGGUUUACAuacuauagucaagaugCGAAUCAUUAUUUGCUGCUCUagaaauuuaa
......(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))........

Structure
--aaagua   U       C  C       A   a  au 
        cua AGCAGCA AU AUGGUUU CAu cu  a
        ||| ||||||| || ||||||| ||| ||  g
        gaU UCGUCGU UA UACUAAG gua ga  u
aauuuaaa   C       U  U       C   -  ac 


Annotation confidence High
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Genome context
JH001756.1: 252840-252917 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-15b-5p

Accession MIMAT0023791
Description Cricetulus griseus cgr-miR-15b-5p mature miRNA
Sequence 10 - UAGCAGCACAUCAUGGUUUACA - 31
Evidence experimental
Illumina [1]

Mature cgr-miR-15b-3p

Accession MIMAT0023792
Description Cricetulus griseus cgr-miR-15b-3p mature miRNA
Sequence 48 - CGAAUCAUUAUUUGCUGCUCU - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75