Stem-loop cgr-mir-155

Accession

MI0020415

Description

Cricetulus griseus cgr-mir-155 precursor miRNA

Gene family

MIPF0000157; mir-155

Literature search

1 open access papers mention cgr-mir-155
(2 sentences)

Sequence

7672 reads, 100 reads per million, 6 experiments

cuguaugcugUUAAUGCUAAUCGUGAUAGGGGuuuuugcgucugacugacuccuacauguuagcauuaacaggguacgaugccugccugc
.(((((.(((((((((((((.((((.((((((((.............))))))))))))))))))))))))).)))))............

Structure

-----------c     g             U    A        uuugc 
            uguau cugUUAAUGCUAA CGUG UAGGGGuu     g
            ||||| ||||||||||||| |||| ||||||||     u
            gcaug gacaauuacgauu guac auccucag     c
cguccguccgua     g             -    -        ucagu 

Annotation confidence Not enough data

Genome context

JH000510.1: 757679-757768 [-]

Mature cgr-miR-155

• Accession: MIMAT0023788
• Description: Cricetulus griseus cgr-miR-155 mature miRNA
• Sequence: 11 - UUAAUGCUAAUCGUGAUAGGGG - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75