Stem-loop bna-MIR172a

Accession

MI0020280

Description

Brassica napus bna-MIR172a precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

13 open access papers mention bna-MIR172a
(48 sentences)

Sequence

uuuuguaggcgcagcaccaucaagauucacauggaaauugaaaaaucuccuaauuuuuaauuaggguuuugauauguauaugAGAAUCUUGAUGAUGCUGCAUcaacaac
..((((.((.((((((.(((((((((((.((((...((...(((((..(((((((...))))))))))))...))...)))).))))))))))).)))))).)).)))).

Structure

uu    a  c      c           a    gaa  uga     cu       u 
  uugu gg gcagca caucaagauuc caug   au   aaaau  ccuaauu  
  |||| || |||||| ||||||||||| ||||   ||   |||||  ||||||| u
  aaca cU CGUCGU GUAGUUCUAAG guau   ua   uuuug  ggauuaa  
-c    a  A      A           A    aug  uag     --       u 

Annotation confidence Not enough data

Genome context

EM:AC189388: 19381-19490 [-]

Mature bna-miR172a

• Accession: MIMAT0023633
• Description: Brassica napus bna-miR172a mature miRNA
• Sequence: 83 - AGAAUCUUGAUGAUGCUGCAU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823