miRBase entry: bna-MIR172c

Stem-loop bna-MIR172c


Accession
MI0020279
Description
Brassica napus bna-MIR172c precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
12 open access papers mention bna-MIR172c
(48 sentences)

Sequence

cagccgguaguugcagaugcagcaucaucaagauucacaagugaagugguuuccuugguuuucgccucuccauccgaaaacaaaggguucuucucgaaugGGAAUCUUGAUGAUGCUGCAUcagcauauacauggcua
.((((((((..(((.(((((((((((((((((((((.((..(((.(.((..(((((.(((((((..........))))))).)))))..)).))))..)).))))))))))))))))))))).)))..))).))))).

Structure
c     -   gu   a                     a  ag   a u  uu     g       ccuc 
 agccg gua  ugc gaugcagcaucaucaagauuc ca  uga g gg  uccuu guuuucg    u
 ||||| |||  ||| ||||||||||||||||||||| ||  ||| | ||  ||||| |||||||     
 ucggu cau  acg cUACGUCGUAGUAGUUCUAAG gu  gcu c uc  gggaa caaaagc    c
a     a   au   a                     G  aa   - u  uu     a       cuac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
EM:AC189559: 3489-3626 [+]

Database links

Mature bna-miR172c

Accession MIMAT0023632
Description Brassica napus bna-miR172c mature miRNA
Sequence 101 - GGAAUCUUGAUGAUGCUGCAU - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22138974
    Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
    "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
    "Plant Physiol (2012) 158:813-823