miRBase entry: bna-MIR156e

Stem-loop bna-MIR156e


Accession
MI0020261
Description
Brassica napus bna-MIR156e precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
13 open access papers mention bna-MIR156e
(209 sentences)

Sequence

gaaaugcaacagagaaaacUGACAGAAGAGAGUGAGCACuugcaaggcacuguuaugugucaauaacuuugcgugugcgugcucaccucucuuucugucaguugccugacuucucgcuu
...........((((((((((((((((((((((((((((.((((..(((..(((((......)))))..))).)))).))))))).))))).))))))))))).......)))))....

Structure
gaaaugcaaca     -------           -     -       u    ag   cu     gu 
           gagaa       aacUGACAGAA GAGAG UGAGCAC ugca  gca  guuau  g
           |||||       ||||||||||| ||||| ||||||| ||||  |||  |||||   
           cucuu       uugacugucuu cucuc acucgug gugu  cgu  caaua  u
-------uucg     caguccg           u     c       c    -g   uu     ac 


Annotation confidence Not enough data
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Genome context
EM:AC189375: 124714-124832 [+]

Database links

Mature bna-miR156e

Accession MIMAT0023614
Description Brassica napus bna-miR156e mature miRNA
Sequence 20 - UGACAGAAGAGAGUGAGCAC - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22138974
    Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
    "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
    "Plant Physiol (2012) 158:813-823