miRBase entry: sly-MIR6026

Stem-loop sly-MIR6026


Accession
MI0020257
Description
Solanum lycopersicum sly-MIR6026 precursor miRNA
Gene family
MIPF0001554; MIR6026

Literature search
5 open access papers mention sly-MIR6026
(18 sentences)

Sequence

cacuuugauuugguaauacaacuauagccaagacaaugcuucauuauaagugcauaacuuuucacuuuauuguuugagcauuguguugauuucucuaaacuuguuuuucguugaacaagauuguuuuuucauauacucauggaaagcaacaccgugcucagaaguuagagugaaauguuaugcauuugugauuauauauuUUCUUGGCUAGAGUUGUAUUGCcaagugaaguguuuuaauug
((((((.((((((((((((((((.(((((((((.((((....((((((((((((((((.((((((((((...(((((((((.((((((...........(((((((......))))))).....((((((((......)))))))))))))).)))))))))...)))))))))).))))))))))))))))....)))).))))))))).)))))))))))))))))))))).........

Structure
---------      g                a         c    cuuc                u          uug         u      auuucucuaaacuuguuuuucguugaacaagauugu        au 
         cacuuu auuugguaauacaacu uagccaaga aaug    auuauaagugcauaac uuucacuuua   uuugagcau guguug                                    uuuuucau  a
         |||||| |||||||||||||||| ||||||||| ||||    |||||||||||||||| ||||||||||   ||||||||| ||||||                                    ||||||||   
         gugaag ugaacCGUUAUGUUGA AUCGGUUCU uuau    uaguguuuacguauug aaagugagau   agacucgug cacaac                                    gaaaggua  c
guuaauuuu      -                G         U    auau                u          uga         c      ------------------------------------        cu 


Annotation confidence Not enough data
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Genome context
chr1: 832340-832581 [+]

Database links

Mature sly-miR6026

Accession MIMAT0023610
Description Solanum lycopersicum sly-miR6026 mature miRNA
Sequence 201 - UUCUUGGCUAGAGUUGUAUUGC - 222
Evidence not_experimental

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795