miRBase entry: nta-MIR6025b

Stem-loop nta-MIR6025b


Accession
MI0020254
Description
Nicotiana tabacum nta-MIR6025b precursor miRNA
Gene family
MIPF0001375; MIR6025

Literature search
1 open access papers mention nta-MIR6025b
(2 sentences)

Sequence

aaaguauuguuguaccuggauguuaucucaguguuggcaugcauaaguuggguaagacauaucugaucaaaaauauuuucugagaugagauggaauauauauauuuugguguuuuaccuaguucaggcaUGCCAACUAUUGAGAUGACAUCuagguuugucga
......(((....(((((((((((((((((((((((((((((.....(((((((((((((((((.(((...............))).))))((((((....)))))).))))))))))))).....)))))))))).)))))))))))))))))))....)))

Structure
aaagua   uugu                   -          auaag             -----------------    g   aaaaau 
      uug    accuggauguuaucucagu guuggcaugc     uuggguaagacau                 aucu auc      a
      |||    ||||||||||||||||||| ||||||||||     |||||||||||||                 |||| |||      u
      agc    uggauCUACAGUAGAGUUA CAACCGUacg     gauccauuuugug                 uaga uag      u
------   uguu                   U          gacuu             guuuuauauauauaagg    g   agucuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6025b

Accession MIMAT0023607
Description Nicotiana tabacum nta-miR6025b mature miRNA
Sequence 130 - UGCCAACUAUUGAGAUGACAUC - 151
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795

  2. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28