miRBase entry: sly-MIR482c

Stem-loop sly-MIR482c


Accession
MI0020251
Description
Solanum lycopersicum sly-MIR482c precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
23 open access papers mention sly-MIR482c
(243 sentences)

Sequence

guguuucgaggagguguuggaguggguggugugguaagauuucauauuuauuuuccauaaaaauugagaUCUUGCCAAUACCGCCCAUUCCuauggcuucugaucauuucu
(((..((.(((((.(((.((((((((((((((((((((((((((..(((((.....)))))...)))))))))))).)))))))))))))).))).))))))).)))....

Structure
----   uu  g     g   u              -            -ua     u 
    gug  uc aggag ugu ggaguggguggugu gguaagauuuca   uuuau u
    |||  || ||||| ||| |||||||||||||| ||||||||||||   ||||| u
    uac  ag ucuuc gua CCUUACCCGCCAUA CCGUUCUagagu   aaaua c
ucuu   -u  -     g   u              A            uaa     c 


Annotation confidence Not enough data
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Genome context
chr6: 37388175-37388285 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from sly-MIR482c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sly-miR482c

Accession MIMAT0023603
Description Solanum lycopersicum sly-miR482c mature miRNA
Sequence 70 - UCUUGCCAAUACCGCCCAUUCC - 91
Evidence not_experimental

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795