Stem-loop sequence stu-MIR482a

Accession

MI0020246 (change log)

Description

Solanum tuberosum miR482a stem-loop

Gene family

MIPF0000403; MIR482

Literature search

8 open access papers mention stu-MIR482a
(37 sentences)

Stem-loop

   --   uu u       u          u      -          uuu   uu 
5'   gag  u ucgaaaa cuaugggaau ggugga uuggaaagcu   auu  c
     |||  | ||||||| |||||||||| |||||| ||||||||||   |||  u
3'   cuc  a ggcuuuu gguauccuua ccaccu aaccuuucga   uag  u
   cu   cu u       u          c      u          --u   uc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137851.1: 1458152-1458255 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007A391C_4113
• miRBase Tracker:MI0020246

Mature sequence stu-miR482a-5p

• Accession: MIMAT0031161
• Sequence: 21 - ggaauugguggauuggaaagc - 41
• Evidence: experimental; Illumina [2]

Mature sequence stu-miR482a-3p

• Accession: MIMAT0023598
• Sequence: 63 - uuuccaauuccacccauuccua - 84
• Evidence: experimental; Illumina [2]

References

1. PMID:22307647 "MicroRNA regulation of plant innate immune receptors" Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B Proc Natl Acad Sci U S A. 109:1790-1795(2012).
2. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).