miRBase entry: stu-MIR482a

Stem-loop stu-MIR482a


Accession
MI0020246
Description
Solanum tuberosum stu-MIR482a precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
8 open access papers mention stu-MIR482a
(38 sentences)

Sequence

gaguuuuucgaaaaucuaugGGAAUUGGUGGAUUGGAAAGCuuuuauuuucuucugauuagcUUUCCAAUUCCACCCAUUCCUAugguuuuucgguauccucuc
(((..(.(((((((.((((((((((.((((((((((((((((.(((........)))..)))))))))).)))))).)))))))))).))))))).)..)))..

Structure
--   uu u       u          U      -          -u   uuu 
  gag  u ucgaaaa cuaugGGAAU GGUGGA UUGGAAAGCu  uua   u
  |||  | ||||||| |||||||||| |||||| ||||||||||  |||    
  cuc  a ggcuuuu gguAUCCUUA CCACCU AACCUUUcga  agu   c
cu   cu u       u          C      U          uu   cuu 


Annotation confidence Not enough data
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Genome context
JH137851.1: 1458152-1458255 [+]

Database links

Mature stu-miR482a-3p

Accession MIMAT0023598
Description Solanum tuberosum stu-miR482a-3p mature miRNA
Sequence 63 - UUUCCAAUUCCACCCAUUCCUA - 84
Evidence experimental
Illumina [2]

Mature stu-miR482a-5p

Accession MIMAT0031161
Description Solanum tuberosum stu-miR482a-5p mature miRNA
Sequence 21 - GGAAUUGGUGGAUUGGAAAGC - 41
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795

  2. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233