miRBase entry: stu-MIR6024

Stem-loop stu-MIR6024


Accession
MI0020241
Description
Solanum tuberosum stu-MIR6024 precursor miRNA
Gene family
MIPF0001459; MIR6024

Literature search
4 open access papers mention stu-MIR6024
(46 sentences)

Sequence

aaauugguaaugggaaguggAGAAACAACACUUGCUAAAAGAaguucaucagugauucucucuucuuuuggaguuuUUUUAGCAAGAGUUGUUUUCCCucuucucaauuccgucucuc
.....((...(((((((.((.((((((((.(((((((((((((.((((..((.((.....))..))..)))).))))))))))))).)))))))).)).)))))))...)).......

Structure
--aaauu  uaa       u  A        A             g    uc  -u  u 
       gg   ugggaag gg GAAACAAC CUUGCUAAAAGAa uuca  ag  ga u
       ||   ||||||| || |||||||| ||||||||||||| ||||  ||  || c
       cc   acucuuc CC UUUUGUUG GAACGAUUUUuuu aggu  uc  cu u
cucucug  uua       u  C        A             g    uu  uu  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH137968.1: 737039-737156 [-]

Database links

Mature stu-miR6024-3p

Accession MIMAT0023593
Description Solanum tuberosum stu-miR6024-3p mature miRNA
Sequence 77 - UUUUAGCAAGAGUUGUUUUCCC - 98
Evidence experimental
Illumina [2]

Mature stu-miR6024-5p

Accession MIMAT0031159
Description Solanum tuberosum stu-miR6024-5p mature miRNA
Sequence 21 - AGAAACAACACUUGCUAAAAGA - 42
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795

  2. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233