Stem-loop sequence sly-MIR6023

Accession

MI0020240 (change log)

Description

Solanum lycopersicum miR6023 stem-loop

Gene family

MIPF0001603; MIR6023

Literature search

6 open access papers mention sly-MIR6023
(11 sentences)

Stem-loop

   --a   g       u                aga               cu  u                 uc  -------a   -g      cucuuggacagaaauuucugaucaaag 
5'    gca uaaucuc guucauauuccaugaa   guuuuuggauaagau  uu accguaguaaucacaaa  cu        gac  acugug                           c
      ||| ||||||| ||||||||||||||||   |||||||||||||||  || |||||||||||||||||  ||        |||  ||||||                           a
3'    ugu guuagag cgaguauaagguacuu   cagagaccuauucua  ga uggcaucauuaguguuu  ga        cug  ugacau                           u
   auc   g       u                -aa               ag  c                 gu  gcuacucc   ga      ucguaagagaacuuaaauucuucccuu 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr12: 66469562-66469795 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075C59F_4081
• miRBase Tracker:MI0020240

Mature sequence sly-miR6023

• Accession: MIMAT0023592
• Sequence: 21 - uuccaugaaagaguuuuuggau - 42
• Evidence: not experimental

References

1. PMID:22307647 "MicroRNA regulation of plant innate immune receptors" Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B Proc Natl Acad Sci U S A. 109:1790-1795(2012).