miRBase entry: nta-MIR6019a

Stem-loop nta-MIR6019a


Accession
MI0020232
Description
Nicotiana tabacum nta-MIR6019a precursor miRNA
Gene family
MIPF0001486; MIR6019

Literature search
1 open access papers mention nta-MIR6019a
(2 sentences)

Sequence

uccuaguugucaaaaguucgUACAGGUGACUUGUAAAUGUUUugcgaccuucuaauaugauacuggcaaaacauuuacacguaccuuguaugaacuuuugauucuagcuuug
..((((..((((((((((((((((((((.(.((((((((((((((.(...((......))...).)))))))))))))).))))).)))))))))))))))).)))).....

Structure
---uc    uu                -    A U              g ccu  ua 
     cuag  gucaaaaguucgUACA GGUG C UGUAAAUGUUUugc a   uc  a
     ||||  |||||||||||||||| |||| | |||||||||||||| |   ||   
     gauc  uaguuuucaaguaugu ccau g acauuuacaaaacg u   ag  u
guuuc    -u                u    - c              g cau  ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6019a

Accession MIMAT0023583
Description Nicotiana tabacum nta-miR6019a mature miRNA
Sequence 21 - UACAGGUGACUUGUAAAUGUUU - 42
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795

  2. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28