miRBase entry: tca-mir-6015

Stem-loop tca-mir-6015


Accession
MI0020226
Description
Tribolium castaneum tca-mir-6015 precursor miRNA


Sequence

cuuuucgucauuuaauaaucgcgauuGGCACACCUGCCGCUCCAAuauucagaaauauAGGCAGAUGCAGCGCCGGUuguggugaugugugu
.....((((((........((((((((((....((((..((((.(((((....))))).)).))..)))).)))))))))))))))).....

Structure
cuuuu      uuaauaau          ACAC    CG  -  A     c 
     cgucau        cgcgauuGGC    CUGC  CU CC Auauu a
     ||||||        ||||||||||    ||||  || || |||||  
     guagug        guguUGGCCG    GACG  GA GG uauaa g
ugugu      --------          ---C    UA  C  A     a 


Annotation confidence Not enough data
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Genome context
ChLG4: 10702478-10702569 [-]

Database links

Mature tca-miR-6015-5p

Accession MIMAT0023571
Description Tribolium castaneum tca-miR-6015-5p mature miRNA
Sequence 27 - GGCACACCUGCCGCUCCAA - 45
Evidence experimental
SOLiD [1]

Mature tca-miR-6015-3p

Accession MIMAT0023572
Description Tribolium castaneum tca-miR-6015-3p mature miRNA
Sequence 59 - AGGCAGAUGCAGCGCCGGU - 77
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696

  2. PubMed ID: 22171334
    Detection of microRNAs in color space
    "Marco A, Griffiths-Jones S"
    "Bioinformatics (2012) 28:318-323