Stem-loop tca-mir-6014

Accession

MI0020225

Description

Tribolium castaneum tca-mir-6014 precursor miRNA

Sequence

cauuaaauugggucACUCUCUUGACGUAUUCCAaauaaagcaugauuuggAAUUUCCCGUGUUGAGUGGcauaaauuauuug
.....((((..(((((((.....(((.(((((((((........)))))))))....)))...)))))))...)))).....

Structure

cauua    -gg       UCUUG   ---U         aaa 
     aauu   gucACUC     ACG    AUUCCAaau   g
     ||||   |||||||     |||    |||||||||    
     uuaa   cGGUGAG     UGC    UAAgguuua   c
guuua    aua       --UUG   CCUU         gua 

Annotation confidence Not enough data

Genome context

ChLG4: 2771193-2771274 [+]

Mature tca-miR-6014-5p

• Accession: MIMAT0023569
• Description: Tribolium castaneum tca-miR-6014-5p mature miRNA
• Sequence: 15 - ACUCUCUUGACGUAUUCCA - 33
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-6014-3p

• Accession: MIMAT0023570
• Description: Tribolium castaneum tca-miR-6014-3p mature miRNA
• Sequence: 51 - AAUUUCCCGUGUUGAGUGG - 69
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323