Stem-loop sequence tca-mir-6009

Accession

MI0020220 (change log)

Description

Tribolium castaneum miR-6009 stem-loop

Stem-loop

   cgacaguu     gcu    ---   -   aaau        aga   ug    u 
5'         guuug   ucgu   ugg cuc    guugagcg   ccc  acgc c
           |||||   ||||   ||| |||    ||||||||   |||  |||| u
3'         cggac   agcg   acc gag    cagcucgc   ggg  ugcg u
   -------g     ---    uga   u   ----        ---   --    u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Tcas4.0): ChLG2: 187135-187224 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0020220

Mature sequence tca-miR-6009-5p

• Accession: MIMAT0023559
• Sequence: 24 - cucaaauguugagcgagac - 42
• Evidence: experimental; SOLiD [1]

Mature sequence tca-miR-6009-3p

• Accession: MIMAT0023560
• Sequence: 58 - gugggcgcucgacgagucc - 76
• Evidence: experimental; SOLiD [1]

References

1. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).
2. PMID:22171334 "Detection of microRNAs in color space" Marco A, Griffiths-Jones S Bioinformatics. 28:318-323(2012).