Stem-loop sequence tca-mir-6008

Accession

MI0020219 (change log)

Description

Tribolium castaneum miR-6008 stem-loop

Stem-loop

   -   uu      ga          cau   ---uu     -cuuuuc  ca 
5'  gua  uagcug  cugcuggugu   gua     cgacu       ac  u
    |||  ||||||  ||||||||||   |||     |||||       ||   
3'  cau  guuggc  ggcgaucgca   cau     gcuga       ug  g
   u   -u      aa          --c   uaccc     uccucca  cc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Tcas4.0): ChLG2: 11714883-11714978 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0020219

Mature sequence tca-miR-6008-5p

• Accession: MIMAT0023557
• Sequence: 12 - gacugcuggugucauguauu - 31
• Evidence: experimental; SOLiD [1]

Mature sequence tca-miR-6008-3p

• Accession: MIMAT0023558
• Sequence: 68 - auuaccacgcuagcggaac - 86
• Evidence: experimental; SOLiD [1]

References

1. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).
2. PMID:22171334 "Detection of microRNAs in color space" Marco A, Griffiths-Jones S Bioinformatics. 28:318-323(2012).