miRBase entry: tca-mir-6008

Stem-loop tca-mir-6008


Accession
MI0020219
Description
Tribolium castaneum tca-mir-6008 precursor miRNA


Sequence

guauuuagcugGACUGCUGGUGUCAUGUAUUcgacucuuuucaccaugccguaccuccuagucgcccAUUACCACGCUAGCGGAACgguuguuacu
(((..((((((..((((((((((...(((..(((((......((......)).......))))).....))).))))))))))..)))))).))).

Structure
-   uu      GA          CAU   ---UU     -cuuuuc  ca 
 gua  uagcug  CUGCUGGUGU   GUA     cgacu       ac  u
 |||  ||||||  ||||||||||   |||     |||||       ||   
 cau  guuggC  GGCGAUCGCA   CAU     gcuga       ug  g
u   -u      AA          --C   UAccc     uccucca  cc 


Annotation confidence Not enough data
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Genome context
ChLG2: 11714883-11714978 [+]

Database links

Mature tca-miR-6008-5p

Accession MIMAT0023557
Description Tribolium castaneum tca-miR-6008-5p mature miRNA
Sequence 12 - GACUGCUGGUGUCAUGUAUU - 31
Evidence experimental
SOLiD [1]

Mature tca-miR-6008-3p

Accession MIMAT0023558
Description Tribolium castaneum tca-miR-6008-3p mature miRNA
Sequence 68 - AUUACCACGCUAGCGGAAC - 86
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696

  2. PubMed ID: 22171334
    Detection of microRNAs in color space
    "Marco A, Griffiths-Jones S"
    "Bioinformatics (2012) 28:318-323