miRBase entry: ame-mir-6006

Stem-loop ame-mir-6006


Accession
MI0020217
Description
Apis mellifera ame-mir-6006 precursor miRNA


Sequence

caacccucgcuagggugagaaaaAUAACUGGGAAGAGAGAGGaauaauuaAUUUUCUUUUUCAGUUAUAAguuugcauucgagaaauu
.....((((.....(((((....((((((((.(((((((((..........)))))))))))))))))...)))))...)))).....

Structure
caacc    cuagg     aaaa        G         Gaau 
     cucg     gugag    AUAACUGG AAGAGAGAG    a
     ||||     |||||    |||||||| |||||||||     
     gagc     cguuu    UAUUGACU UUUUCUUUU    a
uuaaa    --uua     -gAA        -         Aauu 


Annotation confidence Not enough data
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Genome context
CM000062.5: 171756-171843 [+]

Database links

Mature ame-miR-6006-5p

Accession MIMAT0023553
Description Apis mellifera ame-miR-6006-5p mature miRNA
Sequence 24 - AUAACUGGGAAGAGAGAGG - 42
Evidence experimental
SOLiD [1]

Mature ame-miR-6006-3p

Accession MIMAT0023554
Description Apis mellifera ame-miR-6006-3p mature miRNA
Sequence 51 - AUUUUCUUUUUCAGUUAUAA - 70
Evidence experimental
SOLiD [1], Illumina [3]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 22171334
    Detection of microRNAs in color space
    "Marco A, Griffiths-Jones S"
    "Bioinformatics (2012) 28:318-323

  3. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226