miRBase entry: ame-mir-6005

Stem-loop ame-mir-6005


Accession
MI0020215
Description
Apis mellifera ame-mir-6005 precursor miRNA


Sequence

cgcacugucgacuagucgucaaagauuagaucgucagcaacuuaaguuuaagagaacAUAUGAACUCUUAUGUACGUGAuuacgauuucACAUGCGUAAGAGAUUAUAUGUuuucuugaagcuaauaaucaucgaaguagucauugaugauaacuagucgaua
.....(((((((((((((((((.(((((..(((........(((..(((((((((((((((((.((((((((((.((((........)))).)))))))))).)))))))))))))))))..))).......)))..))))).)))))))...))))))))))

Structure
cgcac          ---       a     ga   ucagcaac   ag                 A          C    uua 
     ugucgacuag   ucgucaa gauua  ucg        uua  uuuaagagaacAUAUGA CUCUUAUGUA GUGA   c
     ||||||||||   ||||||| |||||  |||        |||  ||||||||||||||||| |||||||||| ||||    
     auagcugauc   aguaguu cugau  agc        aau  aaguucuuuUGUAUAUU GAGAAUGCGU CAcu   g
-----          aau       a     ga   -uacuaau   cg                 A          A    uua 


Annotation confidence Not enough data
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Genome context
CM000056.5: 6903412-6903574 [+]

Database links

Mature ame-miR-6005-5p

Accession MIMAT0023549
Description Apis mellifera ame-miR-6005-5p mature miRNA
Sequence 58 - AUAUGAACUCUUAUGUACGUGA - 79
Evidence experimental
SOLiD [1], Illumina [3-5]

Mature ame-miR-6005-3p

Accession MIMAT0023550
Description Apis mellifera ame-miR-6005-3p mature miRNA
Sequence 90 - ACAUGCGUAAGAGAUUAUAUGU - 111
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 22458842
    Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
    "Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
    "Insect Mol Biol (2012) 21:297-303

  3. PubMed ID: 22171334
    Detection of microRNAs in color space
    "Marco A, Griffiths-Jones S"
    "Bioinformatics (2012) 28:318-323

  4. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670

  5. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226