Stem-loop sequence ame-mir-6001

Accession

MI0020211 (change log)

Description

Apis mellifera miR-6001 stem-loop

Literature search

1 open access papers mention ame-mir-6001
(22 sentences)

Stem-loop

   -a   a         ug u       cucu   a 
5'   ggu gguaacgac  a gggaaca    gag u
     ||| |||||||||  | |||||||    ||| u
3'   uca ccauuguug  u cucuugu    uuc u
   ga   -         gu u       -aau   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AMEL4.5; GCA_000002195.1): CM000064.5: 2707108-2707175 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0020211

Mature sequence ame-miR-6001-5p

• Accession: MIMAT0023541
• Sequence: 3 - guagguaacgacugaugggaac - 24
• Evidence: experimental; SOLiD [1]

Mature sequence ame-miR-6001-3p

• Accession: MIMAT0023542
• Sequence: 46 - uucucuuugguuguuaccacua - 67
• Evidence: experimental; SOLiD [1], Illumina [3]

References

1. PMID:20807255 "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera" Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F Insect Mol Biol. 19:799-805(2010).
2. PMID:22171334 "Detection of microRNAs in color space" Marco A, Griffiths-Jones S Bioinformatics. 28:318-323(2012).
3. PMID:26853694 "MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)" Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL Insect Mol Biol. 25:216-226(2016).