miRBase entry: ame-mir-6000a

Stem-loop ame-mir-6000a


Accession
MI0020210
Description
Apis mellifera ame-mir-6000a precursor miRNA


Sequence

ucagauacucgugguggugacgacuCGUGGGUACUACUCGUCUCUAUaucaucaaauuuaUAGUACGAGAAGUACCCACAagacgcaucaucaaguaa
.....((((..((((((((.((.((.(((((((((.(((((..(((((..........))))).))))).))))))))).)).)))))))))))))).

Structure
ucaga    cg        a  a  C         A     CU     ucau 
     uacu  ugguggug cg cu GUGGGUACU CUCGU  CUAUa    c
     ||||  |||||||| || || ||||||||| |||||  |||||     
     auga  acuacuac gc ga CACCCAUGA GAGCA  GAUau    a
----a    --        -  a  A         A     -U     uuaa 


Annotation confidence Not enough data
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Genome context
CM000057.5: 11872162-11872259 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ame-mir-6000a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-6000a-5p

Accession MIMAT0023539
Description Apis mellifera ame-miR-6000a-5p mature miRNA
Sequence 26 - CGUGGGUACUACUCGUCUCUAU - 47
Evidence experimental
SOLiD [1], Illumina [3]

Mature ame-miR-6000a-3p

Accession MIMAT0023540
Description Apis mellifera ame-miR-6000a-3p mature miRNA
Sequence 61 - UAGUACGAGAAGUACCCACA - 80
Evidence experimental
SOLiD [1], Illumina [3]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 22171334
    Detection of microRNAs in color space
    "Marco A, Griffiths-Jones S"
    "Bioinformatics (2012) 28:318-323

  3. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226