miRBase entry: ath-MIR5998b

Stem-loop ath-MIR5998b


Accession
MI0020193
Description
Arabidopsis thaliana ath-MIR5998b precursor miRNA
Gene family
MIPF0001613; MIR5998


Sequence

cucauuuugugagaaaacaaauuggaACAGUUUGUGUUUUGUUUUGUgauguuggaacaaauuggaagaauugccuccaagaagucagaguuugagaauuguacauggcggcgacgguggagaguaacgaauccaacaaaacacaaaacaaaacacaaacuguuccaauuuguuuucuccuuaaguucacaaucgua
...((((...((((((((((((((((((((((((((((((((((((((.(((((((.....((.(.....(((((((((....(((...(((..............)))...)))..))))).))))).)))))))))...))))))))))))))))))))))))))))))))))))))...))))...........

Structure
--------cuc    ugu                                      --a       acaaa  g aagaa    -     agaa   aga   ugagaa 
           auuu   gagaaaacaaauuggaACAGUUUGUGUUUUGUUUUGUg   uguugga     uu g     uugc cucca    guc   guu      u
           ||||   ||||||||||||||||||||||||||||||||||||||   |||||||     || |     |||| |||||    |||   |||       
           ugaa   cucuuuuguuuaaccuugucaaacacaaaacaaaacac   acaaccu     aa c     aaug gaggu    cag   cgg      u
augcuaacacu    uuc                                      aaa       -----  g -----    a     --gg   cgg   uacaug 


Annotation confidence Not enough data
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Genome context
chr5: 3247228-3247424 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR5998b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR5998b

Accession MIMAT0023522
Description Arabidopsis thaliana ath-miR5998b mature miRNA
Sequence 27 - ACAGUUUGUGUUUUGUUUUGU - 47
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22221297
    Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
    "Zhang B, Xie D, Jin Z"
    "J Integr Plant Biol (2012) 54:73-86