Stem-loop ath-MIR5595a

Accession

MI0020188

Description

Arabidopsis thaliana ath-MIR5595a precursor miRNA

Gene family

MIPF0001590; MIR5595

Sequence

aggcuuugauauuaacauggACAUAUGAUCUGCAUCUUUGCacuugaaaaugcaaagaugcagaucauauguccauguuaucaaaagccucaagaaaucuaucauuaucucuugaagauggcagguacauauaaacaguuu
(((((((((((...((((((((((((((((((((((((((((........)))))))))))))))))))))))))))))))).)))))))......((((.(((((.((....)).))))).))))...............

Structure

---------------------------------------------------       -    uua                            cuu 
                                                   aggcuuu gaua   acauggACAUAUGAUCUGCAUCUUUGCa   g
                                                   ||||||| ||||   ||||||||||||||||||||||||||||    
                                                   uccgaaa cuau   uguaccuguauacuagacguagaaacgu   a
uuugacaaauauacauggacgguagaaguucucuauuacuaucuaaagaac       a    ---                            aaa 

Annotation confidence Not enough data

Genome context

chr2: 10026910-10027050 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR5595a

Mature ath-miR5595a

• Accession: MIMAT0023517
• Description: Arabidopsis thaliana ath-miR5595a mature miRNA
• Sequence: 21 - ACAUAUGAUCUGCAUCUUUGC - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22221297
   Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
   "Zhang B, Xie D, Jin Z"
   "J Integr Plant Biol (2012) 54:73-86