miRBase entry: hco-mir-2159

Stem-loop hco-mir-2159


Accession
MI0020178
Description
Haemonchus contortus hco-mir-2159 precursor miRNA


Sequence

ucaaugccaaugucguuacuucaaucagaagcgucuaacaccccccccccccuuuauuuggccucaacccUAAGGGGCCAAAUAAAGGGGGGGggggccaaau
..............((((((((.....))))....))))..((((((((((((((((((((((((........))))))))))))))))))))))))......

Structure
ucaaugccaaugucguuacuucaaucagaagcgucuaacac                        aac 
                                         cccccccccccuuuauuuggccuc   c
                                         ||||||||||||||||||||||||    
                                         ggggGGGGGGGAAAUAAACCGGGG   c
-----------------------------------uaaacc                        AAU 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-2159-3p

Accession MIMAT0023509
Description Haemonchus contortus hco-miR-2159-3p mature miRNA
Sequence 71 - UAAGGGGCCAAAUAAAGGGGGGG - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4