miRBase entry: hco-mir-190

Stem-loop hco-mir-190


Accession
MI0020171
Description
Haemonchus contortus hco-mir-190 precursor miRNA

Literature search
1 open access papers mention hco-mir-190
(1 sentences)

Sequence

accaccauaaGGAUAUGUAUGGGUGAGCUCGUUagaggguuuugacgcucaccuucacccgugacagauccagugaauccauaacgguaccggugaaaaacuc
..((((....((((.((((((((((((...((..(((.((....)).))))).))))))))).))).)))).(((....))).........))))........

Structure
------ac    ----------------auaa    A   -         CUC  Ua   g  u 
        cacc                    GGAU UGU AUGGGUGAG   GU  gag gu u
        ||||                    |||| ||| |||||||||   ||  ||| ||  
        gugg                    ccua aca ugcccacuu   ca  cuc ca u
cucaaaaa    ccauggcaauaccuaaguga    g   g         --c  --   g  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-190-5p

Accession MIMAT0023502
Description Haemonchus contortus hco-miR-190-5p mature miRNA
Sequence 11 - GGAUAUGUAUGGGUGAGCUCGUU - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4