miRBase entry: hco-mir-5978

Stem-loop hco-mir-5978


Accession
MI0020156
Description
Haemonchus contortus hco-mir-5978 precursor miRNA


Sequence

ugccaacaauucauuugcccaugUUCGAGACUAGAGUCACUCCGCAuucucugaugaauguggagugcuaaaauguucucgaauaucaaauaggcauauuaugcgaguaggccucgcuc
((((........(((((...(((((((((((...((.((((((((((((......)))))))))))))).....).))))))))))))))).))))......(((((.....)))))..

Structure
-----------------------    aacaauuc     ccc          - --UAG  U            uc 
                       ugcc        auuug   augUUCGAGA C     AG CACUCCGCAuuc  u
                       ||||        |||||   |||||||||| |     || ||||||||||||   
                       acgg        uaaac   uauaagcucu g     uc gugagguguaag  g
cucgcuccggaugagcguauuau    -------a     ---          u uaaaa  -            ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5978

Accession MIMAT0023488
Description Haemonchus contortus hco-miR-5978 mature miRNA
Sequence 24 - UUCGAGACUAGAGUCACUCCGCA - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4