Stem-loop hco-mir-5885c

Accession

MI0020152

Description

Haemonchus contortus hco-mir-5885c precursor miRNA

Gene family

MIPF0001404; mir-5885

Literature search

1 open access papers mention hco-mir-5885c
(1 sentences)

Sequence

guccgccaauaaacggcugauuaucagaguauacgugguguucugguaagcaugacgcuuaUGAGAUCACGCGUAUAUUCGCUAgacaaguucgaauccucgaggggagu
.((((((.......))).........(((((((((((.((.(((.((((((.....)))))).))).)))))))))))))..........(((((....))))).)))..

Structure

-g   ---gccaauaaacggcugauuauca           g  u   g      a 
  ucc                         gaguauacgug ug ucu guaagc u
  |||                         ||||||||||| || ||| |||||| g
  agg                         CUUAUAUGCGC AC AGA Uauucg a
ug   ggagcuccuaagcuugaacagAUCG           -  U   G      c 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5885c

• Accession: MIMAT0023484
• Description: Haemonchus contortus hco-miR-5885c mature miRNA
• Sequence: 62 - UGAGAUCACGCGUAUAUUCGCUA - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4