miRBase entry: hco-mir-5975

Stem-loop hco-mir-5975


Accession
MI0020151
Description
Haemonchus contortus hco-mir-5975 precursor miRNA


Sequence

uaauauuuauucaaaggaguggagagucggccgauuacuacaaccuucuuugacaaagUUGUAGUAAUCGGCUGACCCUCCAcuccuuugaaugacuaggaguu
......((((((((((((((((((.(((((((((((((((((((.............))))))))))))))))))).)))))))))))))))))).........

Structure
---uaauau                  a                   cuucu 
         uuauucaaaggaguggag gucggccgauuacuacaac     u
         |||||||||||||||||| |||||||||||||||||||     u
         aguaaguuuccucACCUC CAGUCGGCUAAUGAUGUUg     g
uugaggauc                  C                   aaaca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5975

Accession MIMAT0023483
Description Haemonchus contortus hco-miR-5975 mature miRNA
Sequence 59 - UUGUAGUAAUCGGCUGACCCUCCA - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4