miRBase entry: hco-mir-5973

Stem-loop hco-mir-5973


Accession
MI0020148
Description
Haemonchus contortus hco-mir-5973 precursor miRNA


Sequence

gccggccauucuucugccgagaugaagucggagaguucgcucuugcaccacgcuuggacgaucuuggccuugugagcgggcgccgaauCUUGCUGGAAUGUCCAGGGgcg
(((((.((((((...((.(((((....((((...((((((((..(((....(((.(((...))).)))..))))))))))).))))))))))).)))))).))...))).

Structure
-   ---  c      ucu  c     gaag    aga        uu   ccac   u   c 
 gcc   gg cauucu   gc gagau    ucgg   guucgcuc  gca    gcu gga  
 |||   || ||||||   || |||||    ||||   ||||||||  |||    ||| ||| g
 cgG   CC GUAAGG   CG UUCua    agcc   cgggcgag  ugu    cgg ucu  
g   GGA  U      --U  -     ----    --g        --   --uc   u   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5973

Accession MIMAT0023480
Description Haemonchus contortus hco-miR-5973 mature miRNA
Sequence 89 - CUUGCUGGAAUGUCCAGGG - 107
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4