Stem-loop hco-mir-5970

Accession

MI0020145

Description

Haemonchus contortus hco-mir-5970 precursor miRNA

Sequence

agaaagugaugacaacgcuaggCAUUGAUCGAUAUGACUCAcgcgguccugaacgcaaucugaucugcguuuucaguacguggcgaguaaggcggucggucgguugaaac
....((((.......))))....((((((((((...((((.((((...(((((((((........)))))..))))..))))..))))......))))))))))......

Structure

agaaagugaugacaacgcuaggC          ---AUG    -A    guc    --     auc 
                       AUUGAUCGAU      ACUC  cgcg   cuga  acgca   u
                       ||||||||||      ||||  ||||   ||||  |||||    
                       uggcuggcug      ugag  gugc   gacu  ugcgu   g
-----------------caaagu          gcggaa    cg    -au    uu     cua 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5970

• Accession: MIMAT0023477
• Description: Haemonchus contortus hco-miR-5970 mature miRNA
• Sequence: 23 - CAUUGAUCGAUAUGACUCA - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4