miRBase entry: hco-mir-5967

Stem-loop hco-mir-5967


Accession
MI0020142
Description
Haemonchus contortus hco-mir-5967 precursor miRNA


Sequence

caugcgaaccaagaauaacagcaggaugacuguaucucgaaaucuguaguacauggaUUUCGUGAUACCGUUAUCCGGCuguuacuacuaauuaacuacua
...............(((((((.(((((((.(((((.((((((((((.....)))))))))).))))).))))))).))))))).................

Structure
--caugcgaaccaagaa       a       u     u          a 
                 uaacagc ggaugac guauc cgaaaucugu g
                 ||||||| ||||||| ||||| |||||||||| u
                 auuguCG CCUAUUG CAUAG GCUUUaggua a
aucaucaauuaaucauc       G       C     U          c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5967

Accession MIMAT0023474
Description Haemonchus contortus hco-miR-5967 mature miRNA
Sequence 58 - UUUCGUGAUACCGUUAUCCGGC - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4