miRBase entry: hco-mir-5965

Stem-loop hco-mir-5965


Accession
MI0020140
Description
Haemonchus contortus hco-mir-5965 precursor miRNA


Sequence

ucucauacaggcggaauauggacgaaauggagagcggaguugucgcuuacaugaGACAAUUCUGACAUUUCGGAuagugacucucgaaagcccuuga
.........((((((...((..(((((((.....((((((((((.(......).)))))))))).)))))))..)).....))).....))).....

Structure
ucucauaca   -----   --aua  ga       gagag          g uu 
         ggc     gga     ug  cgaaaug     cggaguuguc c  a
         |||     |||     ||  |||||||     |||||||||| |   
         ccg     ucu     au  GCUUUAC     GUCUUAACAG g  c
----aguuc   aaagc   cagug  AG       ----A          a ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5965

Accession MIMAT0023472
Description Haemonchus contortus hco-miR-5965 mature miRNA
Sequence 55 - GACAAUUCUGACAUUUCGGA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4