miRBase entry: hco-mir-5946c

Stem-loop hco-mir-5946c


Accession
MI0020139
Description
Haemonchus contortus hco-mir-5946c precursor miRNA


Sequence

uaugcgaaauauuauuuaaguuuuccucuUGAGCUUUACACCUGUUGUCAUGAgcauauagcgucaugaccuggugugguuuuggagaggaaaacgaaaaucaccacuaa
.............((((..(((((((((((.((..(((((((....(((((((((.....)).)))))))..)))))))..)).)))))))))))..)))).........

Structure
uaugcgaaauauu    aa           G  CU       UGUU       -  a 
             auuu  guuuuccucuU AG  UUACACC    GUCAUGA gc u
             ||||  ||||||||||| ||  |||||||    ||||||| || a
             uaaa  caaaaggagag uu  ggugugg    caguacu cg u
----aaucaccac    ag           g  uu       --uc       g  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5946c

Accession MIMAT0023471
Description Haemonchus contortus hco-miR-5946c mature miRNA
Sequence 30 - UGAGCUUUACACCUGUUGUCAUGA - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4