miRBase entry: hco-mir-5961

Stem-loop hco-mir-5961


Accession
MI0020133
Description
Haemonchus contortus hco-mir-5961 precursor miRNA


Sequence

uucgucacugauucuaguugguuguUCCACGAACUACGCAUUUCUGAugucugccguuaugggaucccauaucggcugaucgugaaacugcguucaggaguaccgagaaugggugacc
...((((((.(((((...((((..((((..((...(((((((((((((....((((.(((((....))))).))))..)))).)))).))))))).)))).))))))))).)))))).

Structure
uuc      g     agu    ug    AC  ACU     -    -    gucu    u     g 
   gucacu auucu   uggu  uUCC  GA   ACGCA UUUC UGAu    gccg uaugg a
   |||||| |||||   ||||  ||||  ||   ||||| |||| ||||    |||| |||||  
   cagugg uaaga   gcca  gagg  cu   ugcgu aaag gcua    cggc auacc u
--c      g     ---    -u    -a  ---     c    u    --gu    u     c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5961

Accession MIMAT0023465
Description Haemonchus contortus hco-miR-5961 mature miRNA
Sequence 26 - UCCACGAACUACGCAUUUCUGA - 47
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4