miRBase entry: hco-mir-5956

Stem-loop hco-mir-5956


Accession
MI0020127
Description
Haemonchus contortus hco-mir-5956 precursor miRNA


Sequence

cugccccuugugguggaaguccaguccugccacauaccgucaaugucuuaaUGUUGCGGCCUGUACUUCUACCAAauucgggcga
.(((((....((((((((((.(((.((.((.((((...............)))).)))).))).)))))))))).....))))).

Structure
c     -cuug          c   u  u  c    accguc 
 ugccc     ugguggaagu cag cc gc acau      a
 |||||     |||||||||| ||| || || ||||      a
 gcggg     ACCAUCUUCA GUC GG CG UGUa      u
a     cuuaA          U   C  -  U    auucug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5956

Accession MIMAT0023459
Description Haemonchus contortus hco-miR-5956 mature miRNA
Sequence 52 - UGUUGCGGCCUGUACUUCUACCAA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4