miRBase entry: hco-mir-5955

Stem-loop hco-mir-5955


Accession
MI0020126
Description
Haemonchus contortus hco-mir-5955 precursor miRNA


Sequence

auuuggguuuUGACAAGACUCCAAGGACUGGUCAgaaucccguagguccgaccagucguugagguugugucgaaaccuaaauu
(((((((((((((((.((((.(((.((((((((.((..((....)))).)))))))).))).)))).))))))))))))))).

Structure
-               A    C   G        A  au  c 
 auuuggguuuUGACA GACU CAA GACUGGUC ga  cc g
 ||||||||||||||| |||| ||| |||||||| ||  ||  
 uaaauccaaagcugu uugg guu cugaccag cu  gg u
u               g    a   g        c  --  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5955

Accession MIMAT0023458
Description Haemonchus contortus hco-miR-5955 mature miRNA
Sequence 11 - UGACAAGACUCCAAGGACUGGUCA - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4