Stem-loop hco-mir-5928d

Accession

MI0020124

Description

Haemonchus contortus hco-mir-5928d precursor miRNA

Gene family

MIPF0001443; mir-5928

Sequence

ggcacaaaccUGAAGUAGAAUAGUUGGGUAUGGUcagcugauccuacugaucuacucugcuucaaguuugugcuc
(((((((((.(((((((((.(((.(.((((.((((....)))).)))).).))).))))))))).))))))))).

Structure

-         c         A   U G    U    a 
 ggcacaaac UGAAGUAGA UAG U GGUA GGUc g
 ||||||||| ||||||||| ||| | |||| ||||  
 ucguguuug acuucgucu auc a ucau cuag c
c         a         c   u g    c    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5928d

• Accession: MIMAT0023456
• Description: Haemonchus contortus hco-miR-5928d mature miRNA
• Sequence: 11 - UGAAGUAGAAUAGUUGGGUAUGGU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4