miRBase entry: hco-mir-40a

Stem-loop hco-mir-40a


Accession
MI0020113
Description
Haemonchus contortus hco-mir-40a precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

accgggaaaacucacuguaagaccauccaguaaagcaucgcaagacuUCACCGGGUGUCUUGCAGUGAGauuuuagaau
.....((((.(((((((((((((.((((.((.(((..((....))))).)).))))))))))))))))).)))).....

Structure
accgg    a             c    a  a   ca  g 
     gaaa cucacuguaagac aucc gu aag  uc c
     |||| ||||||||||||| |||| || |||  ||  
     uuuu GAGUGACGUUCUG UGGG CA Uuc  ag a
uaaga    a             -    C  C   --  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-40a

Accession MIMAT0023444
Description Haemonchus contortus hco-miR-40a mature miRNA
Sequence 48 - UCACCGGGUGUCUUGCAGUGAG - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4