miRBase entry: hco-mir-5944

Stem-loop hco-mir-5944


Accession
MI0020112
Description
Haemonchus contortus hco-mir-5944 precursor miRNA


Sequence

ucggaucccaugcaaaagggccuucacaugggaaucuucugacaUGAAAGGUCCUAUGUGUGGGGCACaaggauguac
..(..(((((((((..((((((((((..(.(((....))).)..)).)))))))).)))))))))..)..........

Structure
--------uc ga         aa        -  ca g   a 
          g  ucccaugca  agggccuu ca  u gga u
          |  |||||||||  |||||||| ||  | |||  
          C  GGGGUGUGU  UCCUGGAA GU  a ucu c
cauguaggaa AC         -A        A  ac g   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5944

Accession MIMAT0023443
Description Haemonchus contortus hco-miR-5944 mature miRNA
Sequence 45 - UGAAAGGUCCUAUGUGUGGGGCAC - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4