miRBase entry: hco-mir-5937

Stem-loop hco-mir-5937


Accession
MI0020101
Description
Haemonchus contortus hco-mir-5937 precursor miRNA


Sequence

uuaacgacaaugacugcuuucauaguccacgauuuggcgagcgagcgaccggucguucgcccAAUCGUGGACUAUGGAAGCAGCcaaugauuggcaagauaugcuaaccc
.......((.((.(((((((((((((((((((((.(((((((((.(....).))))))))).))))))))))))))))))))).)).)).((((((.....))))))...

Structure
--------------uuaacga  a  a                     u         g g 
                     ca ug cugcuuucauaguccacgauu ggcgagcga c a
                     || || ||||||||||||||||||||| ||||||||| |  
                     gu ac GACGAAGGUAUCAGGUGCUAA ccgcuugcu g c
cccaaucguauagaacgguua  a  C                     c         g c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5937

Accession MIMAT0023432
Description Haemonchus contortus hco-miR-5937 mature miRNA
Sequence 63 - AAUCGUGGACUAUGGAAGCAGC - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4