miRBase entry: hco-mir-40e

Stem-loop hco-mir-40e


Accession
MI0020097
Description
Haemonchus contortus hco-mir-40e precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

auuaacaguaugcccaaggacucACUGCAGGACCGCUCAGGUGAAGcuucugaagacuucaccgggauuucugcagugaguucuagccuacaacaccuagc
.......(((.((...((((((((((((((((...(((.((((((((((...))).))))))))))..)))))))))))))))).)).)))..........

Structure
---auuaaca   u  cca                CCG   A       -   c 
          gua gc   aggacucACUGCAGGA   CUC GGUGAAG cuu  
          ||| ||   ||||||||||||||||   ||| ||||||| ||| u
          cau cg   ucuugagugacgucuu   ggg ccacuuc gaa  
cgauccacaa   c  --a                -ua   -       a   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-40e

Accession MIMAT0023428
Description Haemonchus contortus hco-miR-40e mature miRNA
Sequence 24 - ACUGCAGGACCGCUCAGGUGAAG - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4